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GTC ON-DEMAND

Genomics & Bioinformatics
Presentation
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CUDA-Accelerated Short-Read Alignment to a Large Reference Genome
Abstract:
We'll discuss the computational challenge of aligning short DNA reads to very large reference genomes, a problem that tests the limits of computing hardware. We'll explain how adapting a CUDA-accelerated short-read aligner to handle these genomes resulted in a tenfold reduction in execution time.
 
Topics:
Genomics & Bioinformatics, Performance Optimization
Type:
Talk
Event:
GTC Silicon Valley
Year:
2019
Session ID:
S9350
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